Links
Ab-initio Motif Discovery
Gibbs Motif Sampler
AlignACE
BioProspector
Motif Sampler
SeSiMCMC
Consensus and Co-Bind
ANN-Spec
MEME
YEBIS
YMF
MultiProfiler
MITRA
cis-Site Seeker
CoreSearch
MACAW - Multiple Alignment Construction & Analysis Workbench
Melina
Transcription Factor, Binding Site & Motif Databases & Analysis Tools
JASPAR
TRANSFAC - public
GeneExpress / TRRD
Motif Overrepresentation
Pipelined Analysis Programs
Regulatory Sequence Analysis Tools
Toucan
INCLUSive